PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_F9E8D5568.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 721aa    MW: 82554.6 Da    PI: 6.1949
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_F9E8D5568.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.67.4e-12113194291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            +Y+++A   GF   +  +  +      +k +  C+++ k +++++  +++r+  ++++ +C+a+ +vk   +g+we t++++eHnH+l
  Traes_1DL_F9E8D5568.1 113 YYSAHALLSGFVAIRGPNFMR------KKFHVECNRSRKLAPSQDL-KRKREVYSVNKAQCEARAVVKPV-KGQWEFTSVRSEHNHPL 192
                            8999*******9999988777......456799*********9988.99999****************99.9**************** PP

                   FAR1  90 ap 91 
                            +p
  Traes_1DL_F9E8D5568.1 193 CP 194
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-10113194IPR004330FAR1 DNA binding domain
PfamPF105516.2E-29315408IPR018289MULE transposase domain
PROSITE profilePS509669.025598634IPR007527Zinc finger, SWIM-type
PfamPF044347.8E-4605626IPR007527Zinc finger, SWIM-type
SMARTSM005750.0074609636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDGYTIISSD QEQPVIGADW SSGALSDELE IHANSADLSL QLAEEQSQLH DILGINEMPI  60
NDTGSASDSD GSSGNETDKE PGKYFYPGFD ELVDPRPPEV GMRFPTLEDA TRYYSAHALL  120
SGFVAIRGPN FMRKKFHVEC NRSRKLAPSQ DLKRKREVYS VNKAQCEARA VVKPVKGQWE  180
FTSVRSEHNH PLCPSPSLTK FFLSCKHMSA EEKSFLRALQ QSSIHPKKAM KIFKRMRGIL  240
GSLPFNTKDA NTSQCAEQQG KPNSDVETTV KHLKELELQN PCVSITMQTD EDSIVRSLFW  300
TDARSRLDYE IFGDVLSFDT TYSTISHNML FTSISGMNEH GRTLVFGYAL LQDRKAETFK  360
WMFQTFFHVM GRKMPRAIIT DQDEAIAKAI SEVMPQVKHR FCKFHVMRKA REMLGGFIAA  420
RGNISSELRA LVNNSLTEAE FEEGWAALIE MYSASENEYL QLLWETRKEW VPVYFREDFY  480
PFVETTGCCE GANSLFKDYV LPKDRIEKFL ERYEDVQERI METDDEDRLQ SRTEPSCFSM  540
QPIEKHAARI YTRQIFLKVQ RELLHSTAFN VQEIQTGTVY RLEKVSAYEN PEFDRNSFEL  600
LVEPSTNAIK CECAKFTRDG IPCCHIFRLF TQFGVNEIPG QYIAPRWTAK FKEEQMKQYR  660
EKCLDSRGMD QSENSMRYAM LLSKVADIGK EICGDGSKCD KFRLELDTIQ GKTGKGGIKN  720
T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-77HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571206.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5AJT60.0W5AJT6_WHEAT; Uncharacterized protein
STRINGMLOC_58126.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-77FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]